Detailed information of SNP:
|
SNP ID:
sf1005387788(Gbrowse)
Chromosome: chr10 Position: 5387788 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 76.35% | 23.65% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 472 | 35.59% | 64.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 311 | 29.58% | 70.42% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005387788 | T->G | INTERGENIC | None |