Detailed information of SNP:



SNP ID: sf1005394153(Gbrowse)

Chromosome: chr10

Position: 5394153
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1416 95.76% 4.24%
All Indica799 99.75% 0.25%
All Japonica494 88.26% 11.74%
Aus67 100.00% 0.00%
Indica I375 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica332 82.53% 17.47%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1005394153 G->T INTERGENIC None