Detailed information of SNP:
|
SNP ID:
sf1005438446(Gbrowse)
Chromosome: chr10 Position: 5438446 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 83.57% | 16.43% |
| All Indica | 747 | 71.62% | 28.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 342 | 52.34% | 47.66% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 194 | 84.02% | 15.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005438446 | C->T | INTERGENIC | None |