Detailed information of SNP:
|
SNP ID:
sf1005443873(Gbrowse)
Chromosome: chr10 Position: 5443873 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 92.92% | 7.08% |
| All Indica | 796 | 97.86% | 2.14% |
| All Japonica | 494 | 98.58% | 1.42% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005443873 | T->C | INTERGENIC | None |