Detailed information of SNP:
|
SNP ID:
sf1005447842(Gbrowse)
Chromosome: chr10 Position: 5447842 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 53.22% | 46.78% |
| All Indica | 796 | 20.35% | 79.65% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 13.10% | 86.90% |
| Indica II | 212 | 27.83% | 72.17% |
| Indica Intermediate | 210 | 25.71% | 74.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005447842 | G->A | INTERGENIC | None |