Detailed information of SNP:
|
SNP ID:
sf1005448490(Gbrowse)
Chromosome: chr10 Position: 5448490 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 85.83% | 14.17% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 80.04% | 19.96% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 71.86% | 28.14% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005448490 | C->G | INTERGENIC | None |