Detailed information of SNP:
|
SNP ID:
sf1005450291(Gbrowse)
Chromosome: chr10 Position: 5450291 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.39% | 12.61% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 82.90% | 17.10% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005450291 | C->T | INTERGENIC | None |