Detailed information of SNP:
|
SNP ID:
sf1005451100(Gbrowse)
Chromosome: chr10 Position: 5451100 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.02% | 11.98% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 79.70% | 20.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005451100 | T->C | INTERGENIC | None |