Detailed information of SNP:
|
SNP ID:
sf1005453352(Gbrowse)
Chromosome: chr10 Position: 5453352 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 90.89% | 9.11% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 91.29% | 8.71% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005453352 | A->G | LOC_Os10g10020(LOC_Os10g10020.1) | INTRON |