Detailed information of SNP:
|
SNP ID:
sf1005458636(Gbrowse)
Chromosome: chr10 Position: 5458636 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.81% | 46.19% |
| All Indica | 798 | 23.93% | 76.07% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 11.23% | 88.77% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005458636 | G->A | INTERGENIC | None |