Detailed information of SNP:
|
SNP ID:
sf1005468376(Gbrowse)
Chromosome: chr10 Position: 5468376 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 79.18% | 20.82% |
| All Indica | 797 | 82.56% | 17.44% |
| All Japonica | 497 | 71.23% | 28.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 76.72% | 23.28% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005468376 | A->G | INTERGENIC | None |