Detailed information of SNP:



SNP ID: sf1005486772(Gbrowse)

Chromosome: chr10

Position: 5486772
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1408 94.89% 5.11%
All Indica794 95.21% 4.79%
All Japonica494 94.13% 5.87%
Aus67 100.00% 0.00%
Indica I373 97.05% 2.95%
Indica II211 94.31% 5.69%
Indica Intermediate210 92.86% 7.14%
Temperate Japonica333 98.50% 1.50%
Tropical Japonica93 79.57% 20.43%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 87.18% 12.82%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1005486772 G->T INTERGENIC None