Detailed information of SNP:
|
SNP ID:
sf1005486772(Gbrowse)
Chromosome: chr10 Position: 5486772 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 94.89% | 5.11% |
| All Indica | 794 | 95.21% | 4.79% |
| All Japonica | 494 | 94.13% | 5.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005486772 | G->T | INTERGENIC | None |