Detailed information of SNP:
|
SNP ID:
sf1005501837(Gbrowse)
Chromosome: chr10 Position: 5501837 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 78.55% | 21.45% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 496 | 73.79% | 26.21% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 71.64% | 28.36% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005501837 | A->G | INTERGENIC | None |