Detailed information of SNP:
|
SNP ID:
sf1005506685(Gbrowse)
Chromosome: chr10 Position: 5506685 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 90.86% | 9.14% |
| All Indica | 750 | 83.47% | 16.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 71.51% | 28.49% |
| Indica II | 198 | 97.98% | 2.02% |
| Indica Intermediate | 201 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005506685 | G->T | LOC_Os10g10080(LOC_Os10g10080.1) | INTRON |
| sf1005506685 | G->T | LOC_Os10g10080(LOC_Os10g10080.3) | INTRON |
| sf1005506685 | G->T | LOC_Os10g10080(LOC_Os10g10080.2) | INTRON |