Detailed information of SNP:
|
SNP ID:
sf1005507650(Gbrowse)
Chromosome: chr10 Position: 5507650 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 54.00% | 46.00% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 492 | 3.86% | 96.14% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 331 | 2.11% | 97.89% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005507650 | T->C | INTERGENIC | None |