Detailed information of SNP:
|
SNP ID:
sf1005539688(Gbrowse)
Chromosome: chr10 Position: 5539688 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 97.20% | 2.80% |
| All Indica | 788 | 95.18% | 4.82% |
| All Japonica | 488 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005539688 | C->T | LOC_Os10g10110(LOC_Os10g10110.1) | Synonymous |