Detailed information of SNP:
|
SNP ID:
sf1005546732(Gbrowse)
Chromosome: chr10 Position: 5546732 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 58.88% | 41.12% |
| All Indica | 785 | 89.17% | 10.83% |
| All Japonica | 478 | 14.85% | 85.15% |
| Aus | 61 | 29.51% | 70.49% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 328 | 10.06% | 89.94% |
| Tropical Japonica | 87 | 29.89% | 70.11% |
| Japonica Intermediate | 63 | 19.05% | 80.95% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005546732 | G->A | INTERGENIC | None |