Detailed information of SNP:
|
SNP ID:
sf1005568945(Gbrowse)
Chromosome: chr10 Position: 5568945 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 91.51% | 8.49% |
| All Indica | 796 | 88.44% | 11.56% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005568945 | T->C | INTERGENIC | None |