Detailed information of SNP:
|
SNP ID:
sf1005572364(Gbrowse)
Chromosome: chr10 Position: 5572364 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.36% | 42.64% |
| All Indica | 796 | 27.39% | 72.61% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 14.97% | 85.03% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 209 | 42.11% | 57.89% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005572364 | G->A | INTERGENIC | None |