Detailed information of SNP:
|
SNP ID:
sf1005580688(Gbrowse)
Chromosome: chr10 Position: 5580688 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 53.31% | 46.69% |
| All Indica | 793 | 77.43% | 22.57% |
| All Japonica | 481 | 15.38% | 84.62% |
| Aus | 59 | 61.02% | 38.98% |
| Indica I | 373 | 88.20% | 11.80% |
| Indica II | 210 | 67.62% | 32.38% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 326 | 8.59% | 91.41% |
| Tropical Japonica | 90 | 32.22% | 67.78% |
| Japonica Intermediate | 65 | 26.15% | 73.85% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005580688 | T->C | INTERGENIC | None |