Detailed information of SNP:
|
SNP ID:
sf1005581422(Gbrowse)
Chromosome: chr10 Position: 5581422 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 59.41% | 40.59% |
| All Indica | 793 | 78.18% | 21.82% |
| All Japonica | 494 | 28.95% | 71.05% |
| Aus | 59 | 81.36% | 18.64% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 211 | 69.19% | 30.81% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 335 | 26.27% | 73.73% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005581422 | T->C | INTERGENIC | None |