Detailed information of SNP:
|
SNP ID:
sf1005605183(Gbrowse)
Chromosome: chr10 Position: 5605183 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 19.10% | 80.90% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005605183 | A->G | INTERGENIC | None |