Detailed information of SNP:
|
SNP ID:
sf1005632718(Gbrowse)
Chromosome: chr10 Position: 5632718 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.92% | 16.08% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005632718 | C->T | LOC_Os10g10200(LOC_Os10g10200.1) | Non-Synonymous SNP |