Detailed information of SNP:
|
SNP ID:
sf1005632719(Gbrowse)
Chromosome: chr10 Position: 5632719 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 79.48% | 20.52% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 496 | 81.85% | 18.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 334 | 81.14% | 18.86% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005632719 | A->G | LOC_Os10g10200(LOC_Os10g10200.1) | Non-Synonymous SNP |