Detailed information of SNP:
|
SNP ID:
sf1005644054(Gbrowse)
Chromosome: chr10 Position: 5644054 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 92.13% | 7.87% |
| All Indica | 787 | 92.12% | 7.88% |
| All Japonica | 487 | 90.55% | 9.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 208 | 84.13% | 15.87% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 332 | 93.98% | 6.02% |
| Tropical Japonica | 88 | 88.64% | 11.36% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005644054 | C->T | LOC_Os10g10230(LOC_Os10g10230.1) | INTRON |