Detailed information of SNP:
|
SNP ID:
sf1005646940(Gbrowse)
Chromosome: chr10 Position: 5646940 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.92% | 6.08% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 494 | 83.60% | 16.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 84.73% | 15.27% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005646940 | A->T | INTERGENIC | None |