Detailed information of SNP:
|
SNP ID:
sf1005647592(Gbrowse)
Chromosome: chr10 Position: 5647592 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.40% | 14.60% |
| All Indica | 799 | 78.85% | 21.15% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005647592 | G->A | INTERGENIC | None |