Detailed information of SNP:
|
SNP ID:
sf1005675243(Gbrowse)
Chromosome: chr10 Position: 5675243 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 88.37% | 11.63% |
| All Indica | 792 | 88.51% | 11.49% |
| All Japonica | 496 | 85.89% | 14.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 208 | 79.33% | 20.67% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005675243 | C->T | LOC_Os10g10300(LOC_Os10g10300.1) | Synonymous |