Detailed information of SNP:
|
SNP ID:
sf1005675693(Gbrowse)
Chromosome: chr10 Position: 5675693 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 86.56% | 13.43% |
| All Indica | 760 | 84.61% | 15.39% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 94.01% | 5.99% |
| Indica II | 199 | 80.40% | 19.60% |
| Indica Intermediate | 194 | 71.13% | 28.87% |
| Temperate Japonica | 334 | 85.63% | 14.37% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005675693 | A->G | LOC_Os10g10300(LOC_Os10g10300.1) | Synonymous |