Detailed information of SNP:
|
SNP ID:
sf1005675719(Gbrowse)
Chromosome: chr10 Position: 5675719 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 90.73% | 9.27% |
| All Indica | 772 | 84.59% | 15.41% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 94.34% | 5.66% |
| Indica II | 203 | 80.79% | 19.21% |
| Indica Intermediate | 198 | 70.20% | 29.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005675719 | G->A | LOC_Os10g10300(LOC_Os10g10300.1) | Non-Synonymous SNP |