Detailed information of SNP:
|
SNP ID:
sf1005685422(Gbrowse)
Chromosome: chr10 Position: 5685422 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 798 | 36.09% | 63.91% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005685422 | C->T | INTERGENIC | None |