Detailed information of SNP:
SNP ID:
sf1005706286(Gbrowse)
Chromosome: chr10 Position: 5706286 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 94.15% | 5.85% |
All Indica | 799 | 93.37% | 6.63% |
All Japonica | 497 | 94.16% | 5.84% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.93% | 1.07% |
Indica II | 213 | 89.20% | 10.80% |
Indica Intermediate | 211 | 87.68% | 12.32% |
Temperate Japonica | 335 | 98.51% | 1.49% |
Tropical Japonica | 94 | 88.30% | 11.70% |
Japonica Intermediate | 68 | 80.88% | 19.12% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1005706286 | C->T | INTERGENIC | None |