Detailed information of SNP:
|
SNP ID:
sf1005707779(Gbrowse)
Chromosome: chr10 Position: 5707779 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.00% | 38.00% |
| All Indica | 797 | 87.08% | 12.92% |
| All Japonica | 496 | 16.33% | 83.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005707779 | T->C | INTERGENIC | None |