Detailed information of SNP:
|
SNP ID:
sf1005708045(Gbrowse)
Chromosome: chr10 Position: 5708045 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.08% | 37.92% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 496 | 16.53% | 83.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 334 | 21.26% | 78.74% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005708045 | T->C | INTERGENIC | None |