Detailed information of SNP:



SNP ID: sf1005711175(Gbrowse)

Chromosome: chr10

Position: 5711175
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1419 94.64% 5.36%
All Indica799 99.87% 0.13%
All Japonica497 87.53% 12.47%
Aus67 95.52% 4.48%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 81.79% 18.21%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1005711175 A->G LOC_Os10g10360(LOC_Os10g10360.1) Synonymous
sf1005711175 A->G LOC_Os10g10360(LOC_Os10g10360.3) Synonymous
sf1005711175 A->G LOC_Os10g10360(LOC_Os10g10360.4) Synonymous
sf1005711175 A->G LOC_Os10g10360(LOC_Os10g10360.2) Synonymous