Detailed information of SNP:
|
SNP ID:
sf1005712078(Gbrowse)
Chromosome: chr10 Position: 5712078 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 88.78% | 11.22% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 496 | 86.90% | 13.10% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 81.44% | 18.56% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005712078 | A->G | LOC_Os10g10360(LOC_Os10g10360.1) | Synonymous |
| sf1005712078 | A->G | LOC_Os10g10360(LOC_Os10g10360.3) | Synonymous |
| sf1005712078 | A->G | LOC_Os10g10360(LOC_Os10g10360.4) | Synonymous |
| sf1005712078 | A->G | LOC_Os10g10360(LOC_Os10g10360.2) | Synonymous |