Detailed information of SNP:
|
SNP ID:
sf1005757615(Gbrowse)
Chromosome: chr10 Position: 5757615 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.41% | 39.59% |
| All Indica | 799 | 35.67% | 64.33% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005757615 | G->A | LOC_Os10g10450(LOC_Os10g10450.1) | INTRON |