Detailed information of SNP:
|
SNP ID:
sf1005776928(Gbrowse)
Chromosome: chr10 Position: 5776928 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 81.51% | 18.49% |
| All Indica | 799 | 76.97% | 23.03% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005776928 | T->A | LOC_Os10g10480(LOC_Os10g10480.1) | INTRON |