Detailed information of SNP:
SNP ID:
sf1005785222(Gbrowse)
Chromosome: chr10 Position: 5785222 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 94.08% | 5.92% |
All Indica | 799 | 98.12% | 1.88% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 4.48% | 95.52% |
Indica I | 375 | 97.07% | 2.93% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1005785222 | T->C | INTERGENIC | None |