Detailed information of SNP:
|
SNP ID:
sf1005816799(Gbrowse)
Chromosome: chr10 Position: 5816799 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 90.44% | 9.56% |
| All Indica | 794 | 89.17% | 10.83% |
| All Japonica | 495 | 90.91% | 9.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005816799 | C->A | LOC_Os10g10520(LOC_Os10g10520.1) | Non-Synonymous SNP |