Detailed information of SNP:
|
SNP ID:
sf1005818595(Gbrowse)
Chromosome: chr10 Position: 5818595 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 89.47% | 10.53% |
| All Indica | 786 | 82.70% | 17.30% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 207 | 79.71% | 20.29% |
| Indica Intermediate | 206 | 66.50% | 33.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005818595 | G->A | LOC_Os10g10520(LOC_Os10g10520.1) | Synonymous |