Detailed information of SNP:
|
SNP ID:
sf1005818857(Gbrowse)
Chromosome: chr10 Position: 5818857 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 77.81% | 22.19% |
| All Indica | 761 | 60.84% | 39.16% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 50.14% | 49.86% |
| Indica II | 206 | 67.96% | 32.04% |
| Indica Intermediate | 206 | 71.84% | 28.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005818857 | G->A | LOC_Os10g10520(LOC_Os10g10520.1) | Non-Synonymous SNP |