Detailed information of SNP:
|
SNP ID:
sf1005820377(Gbrowse)
Chromosome: chr10 Position: 5820377 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 82.39% | 17.61% |
| All Indica | 785 | 79.11% | 20.89% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 209 | 74.64% | 25.36% |
| Indica Intermediate | 203 | 63.55% | 36.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005820377 | C->T | INTERGENIC | None |