Detailed information of SNP:
|
SNP ID:
sf1005837359(Gbrowse)
Chromosome: chr10 Position: 5837359 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 94.76% | 5.24% |
| All Indica | 778 | 91.26% | 8.74% |
| All Japonica | 476 | 99.37% | 0.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 201 | 81.59% | 18.41% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 98.80% | 1.20% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005837359 | T->A | INTERGENIC | None |