Detailed information of SNP:
|
SNP ID:
sf1005842699(Gbrowse)
Chromosome: chr10 Position: 5842699 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 80.59% | 19.41% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 495 | 68.28% | 31.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005842699 | T->G | LOC_Os10g10540(LOC_Os10g10540.1) | INTRON |