Detailed information of SNP:
SNP ID:
sf1005842699(Gbrowse)
Chromosome: chr10 Position: 5842699 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1417 | 80.59% | 19.41% |
All Indica | 799 | 87.61% | 12.39% |
All Japonica | 495 | 68.28% | 31.72% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 75.12% | 24.88% |
Indica Intermediate | 211 | 81.52% | 18.48% |
Temperate Japonica | 335 | 84.78% | 15.22% |
Tropical Japonica | 92 | 18.48% | 81.52% |
Japonica Intermediate | 68 | 54.41% | 45.59% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1005842699 | T->G | LOC_Os10g10540(LOC_Os10g10540.1) | INTRON |