Detailed information of SNP:
|
SNP ID:
sf1005843558(Gbrowse)
Chromosome: chr10 Position: 5843558 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.90% | 35.10% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 494 | 23.48% | 76.52% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 334 | 13.77% | 86.23% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005843558 | A->G | LOC_Os10g10540(LOC_Os10g10540.1) | INTRON |