Detailed information of SNP:
|
SNP ID:
sf1005843567(Gbrowse)
Chromosome: chr10 Position: 5843567 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 64.87% | 35.13% |
| All Indica | 797 | 87.08% | 12.92% |
| All Japonica | 494 | 23.68% | 76.32% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 334 | 13.77% | 86.23% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005843567 | T->A | LOC_Os10g10540(LOC_Os10g10540.1) | INTRON |