Detailed information of SNP:
|
SNP ID:
sf1005858341(Gbrowse)
Chromosome: chr10 Position: 5858341 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 92.05% | 7.95% |
| All Indica | 778 | 91.90% | 8.10% |
| All Japonica | 495 | 91.11% | 8.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 205 | 81.46% | 18.54% |
| Indica Intermediate | 198 | 89.39% | 10.61% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005858341 | C->T | LOC_Os10g10580(LOC_Os10g10580.1) | Synonymous |