Detailed information of SNP:
SNP ID:
sf1005858413(Gbrowse)
Chromosome: chr10 Position: 5858413 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1408 | 97.02% | 2.98% |
All Indica | 788 | 95.30% | 4.70% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 371 | 94.88% | 5.12% |
Indica II | 209 | 96.65% | 3.35% |
Indica Intermediate | 208 | 94.71% | 5.29% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1005858413 | C->T | LOC_Os10g10580(LOC_Os10g10580.1) | INTRON |