Detailed information of SNP:
|
SNP ID:
sf1005872344(Gbrowse)
Chromosome: chr10 Position: 5872344 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1289 | 74.94% | 25.06% |
| All Indica | 793 | 97.98% | 2.02% |
| All Japonica | 421 | 32.78% | 67.22% |
| Aus | 22 | 40.91% | 59.09% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 260 | 7.31% | 92.69% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005872344 | G->T | LOC_Os10g10600(LOC_Os10g10600.1) | Non-Synonymous SNP |